IL_9QQB_178
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 9QQB|1|B5|A|1899
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQB_178 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.1884
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9QQB|1|B5|U|1896
9QQB|1|B5|A|1897
9QQB|1|B5|U|1898
9QQB|1|B5|A|1899
9QQB|1|B5|G|1900
9QQB|1|B5|A|1901
9QQB|1|B5|C|1902
9QQB|1|B5|A|1903
9QQB|1|B5|G|1904
*
9QQB|1|B5|C|1961
9QQB|1|B5|C|1962
9QQB|1|B5|G|1963
9QQB|1|B5|A|1964
9QQB|1|B5|A|1965
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BS
- Large ribosomal subunit protein eL20
- Chain Bm
- Ubiquitin-ribosomal protein eL40 fusion protein
- Chain Bs
- Large ribosomal subunit protein uL10
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