IL_9QQB_200

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_200 not in the Motif Atlas

Geometric match to IL_8P9A_302

Geometric discrepancy: 0.1176

The information below is about IL_8P9A_302

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9QQB|1|B5|A|2675
9QQB|1|B5|A|2676
9QQB|1|B5|C|2677
9QQB|1|B5|A|2678
9QQB|1|B5|A|2679
9QQB|1|B5|OMU|2680
9QQB|1|B5|G|2681
*
9QQB|1|B5|C|3582
9QQB|1|B5|PSU|3583
9QQB|1|B5|A|3584
9QQB|1|B5|PSU|3585

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

Large ribosomal subunit protein uL22

Chain Bd

60S ribosomal protein L31