3D structure

PDB id
9QQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GC*GCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QQB_215 not in the Motif Atlas
Geometric match to IL_8CRE_094
Geometric discrepancy: 0.1251
The information below is about IL_8CRE_094
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22551.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

9QQB|1|B5|G|3512
9QQB|1|B5|C|3513
*
9QQB|1|B5|G|3543
9QQB|1|B5|C|3544
9QQB|1|B5|A|3545
9QQB|1|B5|U|3546

Current chains

Chain B5
28S rRNA

Nearby chains

Chain A2
Small subunit ribosomal RNA; SSU rRNA
Chain AT
Transfer RNA; tRNA
Chain Az
Small ribosomal subunit protein eS32

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