IL_9QQB_220

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9QQB|1|B5|A|4131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_220 not in the Motif Atlas

Geometric match to IL_8P9A_322

Geometric discrepancy: 0.1146

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9QQB|1|B5|G|3648
9QQB|1|B5|A|3649
*
9QQB|1|B5|U|4130
9QQB|1|B5|A|4131
9QQB|1|B5|C|4132
9QQB|1|B5|C|4133

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain BA

Large ribosomal subunit protein uL2

Chain BK

Nascent chain