IL_9QQB_224

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_224 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.1635

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9QQB|1|B5|G|3702
9QQB|1|B5|G|3703
9QQB|1|B5|A|3704
9QQB|1|B5|G|3705
*
9QQB|1|B5|C|3766
9QQB|1|B5|G|3767
9QQB|1|B5|C|3768
9QQB|1|B5|C|3769
9QQB|1|B5|G|3770
9QQB|1|B5|G|3771
9QQB|1|B5|U|3772
9QQB|1|B5|G|3773
9QQB|1|B5|A|3774
9QQB|1|B5|A|3775
9QQB|1|B5|A|3776
9QQB|1|B5|U|3777
9QQB|1|B5|A|3778
9QQB|1|B5|C|3779

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bv

Ribosomal protein uL1