IL_9QQB_252

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9QQB|1|B5|A|4454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_252 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2573

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9QQB|1|B5|G|4426
9QQB|1|B5|A|4427
9QQB|1|B5|U|4428
9QQB|1|B5|U|4429
9QQB|1|B5|A|4430
9QQB|1|B5|U|4431
*
9QQB|1|B5|A|4451
9QQB|1|B5|G|4452
9QQB|1|B5|A|4453
9QQB|1|B5|A|4454
9QQB|1|B5|U|4455
9QQB|1|B5|C|4456

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Large ribosomal subunit protein uL13

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein