IL_9QQQ_032

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9QQQ|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_032 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.182

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9QQQ|1|A|U|662
9QQQ|1|A|A|663
9QQQ|1|A|G|664
9QQQ|1|A|A|665
9QQQ|1|A|G|666
*
9QQQ|1|A|U|740
9QQQ|1|A|G|741
9QQQ|1|A|G|742
9QQQ|1|A|A|743

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS6, fully modified isoform

Chain O

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein bS18