IL_9QQQ_062
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_062 not in the Motif Atlas
- Geometric match to IL_8B0X_062
- Geometric discrepancy: 0.0404
- The information below is about IL_8B0X_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.3
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
9QQQ|1|A|A|1430
9QQQ|1|A|A|1431
9QQQ|1|A|G|1432
9QQQ|1|A|A|1433
9QQQ|1|A|A|1434
9QQQ|1|A|G|1435
*
9QQQ|1|A|C|1466
9QQQ|1|A|C|1467
9QQQ|1|A|A|1468
9QQQ|1|A|C|1469
9QQQ|1|A|U|1470
Current chains
- Chain A
- E. coli 16S rRNA
Nearby chains
- Chain T
- Small ribosomal subunit protein bS20
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- Large ribosomal subunit protein uL14
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: