IL_9QQQ_115

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

9QQQ|1|a|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_115 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.0463

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9QQQ|1|a|G|1432
9QQQ|1|a|A|1433
9QQQ|1|a|A|1434
9QQQ|1|a|G|1435
*
9QQQ|1|a|C|1557
9QQQ|1|a|C|1558
9QQQ|1|a|U|1559
9QQQ|1|a|G|1560
9QQQ|1|a|C|1561

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2