IL_9QQQ_163

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9QQQ|1|a|U|2689, 9QQQ|1|a|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_163 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1805

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9QQQ|1|a|U|2687
9QQQ|1|a|G|2688
9QQQ|1|a|U|2689
9QQQ|1|a|U|2690
9QQQ|1|a|C|2691
*
9QQQ|1|a|G|2718
9QQQ|1|a|G|2719
9QQQ|1|a|U|2720
9QQQ|1|a|A|2721
9QQQ|1|a|G|2722

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19