IL_9QSJ_098

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_098 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.165

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9QSJ|1|a|U|1004
9QSJ|1|a|C|1005
9QSJ|1|a|C|1006
9QSJ|1|a|C|1007
9QSJ|1|a|A|1008
9QSJ|1|a|A|1009
9QSJ|1|a|A|1010
9QSJ|1|a|G|1011
*
9QSJ|1|a|C|1150
9QSJ|1|a|A|1151

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain i

Large ribosomal subunit protein uL13

Chain p

Large ribosomal subunit protein bL20