IL_9QSJ_162

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9QSJ|1|a|U|2689, 9QSJ|1|a|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_162 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1831

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9QSJ|1|a|U|2687
9QSJ|1|a|G|2688
9QSJ|1|a|U|2689
9QSJ|1|a|U|2690
9QSJ|1|a|C|2691
*
9QSJ|1|a|G|2718
9QSJ|1|a|G|2719
9QSJ|1|a|U|2720
9QSJ|1|a|A|2721
9QSJ|1|a|G|2722

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19