IL_9R3A_049

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9R3A|1|A|U|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R3A_049 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.1239

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9R3A|1|A|G|1098
9R3A|1|A|U|1099
9R3A|1|A|U|1100
9R3A|1|A|G|1101
9R3A|1|A|C|1102
*
9R3A|1|A|G|1118
9R3A|1|A|A|1119
9R3A|1|A|A|1120
9R3A|1|A|C|1121
9R3A|1|A|U|1122
9R3A|1|A|C|1123

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10