IL_9R3A_072

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R3A_072 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1054

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9R3A|1|a|G|188
9R3A|1|a|G|189
9R3A|1|a|A|190
9R3A|1|a|A|191
9R3A|1|a|C|192
9R3A|1|a|U|193
9R3A|1|a|G|194
*
9R3A|1|a|C|201
9R3A|1|a|U|202
9R3A|1|a|A|203
9R3A|1|a|A|204
9R3A|1|a|G|205
9R3A|1|a|U|206
9R3A|1|a|A|207
9R3A|1|a|C|208

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28