IL_9R3A_109

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9R3A|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R3A_109 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1828

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9R3A|1|a|C|1208
9R3A|1|a|U|1209
9R3A|1|a|G|1210
9R3A|1|a|C|1211
9R3A|1|a|G|1212
9R3A|1|a|A|1213
9R3A|1|a|A|1214
9R3A|1|a|G|1215
*
9R3A|1|a|U|1234
9R3A|1|a|G|1235
9R3A|1|a|G|1236
9R3A|1|a|A|1237
9R3A|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20