IL_9R3A_135

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9R3A|1|a|A|1801, 9R3A|1|a|C|1816, 9R3A|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R3A_135 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1094

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9R3A|1|a|U|1798
9R3A|1|a|G|1799
9R3A|1|a|C|1800
9R3A|1|a|A|1801
9R3A|1|a|A|1802
9R3A|1|a|A|1803
9R3A|1|a|C|1804
*
9R3A|1|a|G|1813
9R3A|1|a|G|1814
9R3A|1|a|A|1815
9R3A|1|a|C|1816
9R3A|1|a|G|1817
9R3A|1|a|U|1818
9R3A|1|a|A|1819
9R3A|1|a|U|1820
9R3A|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2