IL_9R9O_056

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_056 not in the Motif Atlas

Homologous match to IL_9H3G_064

Geometric discrepancy: 0.0838

The information below is about IL_9H3G_064

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9R9O|1|C1|G|1444
9R9O|1|C1|U|1445
9R9O|1|C1|A|1446
9R9O|1|C1|G|1447
9R9O|1|C1|U|1448
9R9O|1|C1|A|1449
9R9O|1|C1|G|1450
*
9R9O|1|C1|C|2354
9R9O|1|C1|G|2355
9R9O|1|C1|A|2356
9R9O|1|C1|A|2357
9R9O|1|C1|A|2358
9R9O|1|C1|C|2359

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LP

60S ribosomal protein L17-A