IL_9R9O_066

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

9R9O|1|C1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_066 not in the Motif Atlas

Homologous match to IL_9AXU_067

Geometric discrepancy: 0.076

The information below is about IL_9AXU_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.3

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9R9O|1|C1|U|1694
9R9O|1|C1|U|1695
9R9O|1|C1|A|1696
9R9O|1|C1|A|1697
9R9O|1|C1|C|1698
*
9R9O|1|C1|G|1747
9R9O|1|C1|G|1748
9R9O|1|C1|A|1749
9R9O|1|C1|A|1750
9R9O|1|C1|G|1751
9R9O|1|C1|A|1752

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34-A

Chain Lk

60S ribosomal protein L38