IL_9R9O_068
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 9R9O|1|C1|U|1716, 9R9O|1|C1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9R9O_068 not in the Motif Atlas
- Homologous match to IL_9PN5_071
- Geometric discrepancy: 0.0634
- The information below is about IL_9PN5_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.4
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
9R9O|1|C1|C|1711
9R9O|1|C1|G|1712
9R9O|1|C1|G|1713
9R9O|1|C1|A|1714
9R9O|1|C1|A|1715
9R9O|1|C1|U|1716
9R9O|1|C1|U|1717
*
9R9O|1|C1|G|1727
9R9O|1|C1|G|1728
9R9O|1|C1|A|1729
9R9O|1|C1|G|1730
9R9O|1|C1|A|1731
9R9O|1|C1|U|1732
9R9O|1|C1|G|1733
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19-A
- Chain LZ
- 60S ribosomal protein L27-A
- Chain Lc
- 60S ribosomal protein L30
- Chain Lp
- 60S ribosomal protein L43-A
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