IL_9R9O_087

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9R9O|1|C1|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_087 not in the Motif Atlas

Homologous match to IL_9AXU_088

Geometric discrepancy: 0.0962

The information below is about IL_9AXU_088

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9R9O|1|C1|G|2412
9R9O|1|C1|A|2413
*
9R9O|1|C1|U|2807
9R9O|1|C1|A|2808
9R9O|1|C1|C|2809
9R9O|1|C1|C|2810

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain B

Phosphoglycerate kinase

Chain LA

60S ribosomal protein L2-A