IL_9R9O_100

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9R9O|1|C1|G|2945, 9R9O|1|C1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_100 not in the Motif Atlas

Homologous match to IL_9PN5_103

Geometric discrepancy: 0.075

The information below is about IL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9R9O|1|C1|C|2879
9R9O|1|C1|U|2880
9R9O|1|C1|C|2881
*
9R9O|1|C1|G|2943
9R9O|1|C1|U|2944
9R9O|1|C1|G|2945
9R9O|1|C1|A|2946
9R9O|1|C1|G|2947

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23-A