IL_9R9O_106
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 9R9O|1|C1|A|3142, 9R9O|1|C1|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9R9O_106 not in the Motif Atlas
- Homologous match to IL_9PN5_110
- Geometric discrepancy: 0.0787
- The information below is about IL_9PN5_110
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9R9O|1|C1|C|3004
9R9O|1|C1|A|3005
9R9O|1|C1|A|3006
9R9O|1|C1|U|3007
*
9R9O|1|C1|A|3139
9R9O|1|C1|G|3140
9R9O|1|C1|A|3141
9R9O|1|C1|A|3142
9R9O|1|C1|C|3143
9R9O|1|C1|G|3144
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LO
- 60S ribosomal protein L16-A
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