IL_9R9O_108
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9R9O_108 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.0902
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9R9O|1|C1|C|3018
9R9O|1|C1|U|3019
9R9O|1|C1|U|3020
9R9O|1|C1|A|3021
9R9O|1|C1|G|3022
9R9O|1|C1|U|3023
9R9O|1|C1|A|3024
9R9O|1|C1|C|3025
*
9R9O|1|C1|G|3030
9R9O|1|C1|G|3031
9R9O|1|C1|A|3032
9R9O|1|C1|A|3033
9R9O|1|C1|C|3034
9R9O|1|C1|A|3035
9R9O|1|C1|G|3036
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LH
- 60S ribosomal protein L9-A
- Chain LV
- 60S ribosomal protein L23-A
Coloring options: