IL_9R9O_119

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_119 not in the Motif Atlas

Homologous match to IL_9PN5_123

Geometric discrepancy: 0.229

The information below is about IL_9PN5_123

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9R9O|1|C1|C|3233
9R9O|1|C1|A|3234
9R9O|1|C1|C|3235
*
9R9O|1|C1|G|3252
9R9O|1|C1|G|3253
9R9O|1|C1|G|3254

Current chains

Chain C1

25S ribosomal RNA

Nearby chains