IL_9R9O_154

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

9R9O|1|C2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_154 not in the Motif Atlas

Geometric match to IL_9H3G_227

Geometric discrepancy: 0.2639

The information below is about IL_9H3G_227

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9R9O|1|C2|A|481
9R9O|1|C2|U|482
9R9O|1|C2|A|483
*
9R9O|1|C2|U|504
9R9O|1|C2|A|505
9R9O|1|C2|A|506
9R9O|1|C2|U|507

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A