IL_9R9O_160

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9R9O|1|C2|A|579, 9R9O|1|C2|U|581, 9R9O|1|C2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C2|G|562
9R9O|1|C2|U|563
9R9O|1|C2|G|564
9R9O|1|C2|C|565
9R9O|1|C2|C|566
9R9O|1|C2|A|567
9R9O|1|C2|G|568
*
9R9O|1|C2|C|575
9R9O|1|C2|G|576
9R9O|1|C2|G|577
9R9O|1|C2|U|578
9R9O|1|C2|A|579
9R9O|1|C2|A|580
9R9O|1|C2|U|581
9R9O|1|C2|U|582
9R9O|1|C2|C|583

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A