IL_9R9O_180

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_180 not in the Motif Atlas

Homologous match to IL_9PN5_194

Geometric discrepancy: 0.0797

The information below is about IL_9PN5_194

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

7

Unit IDs

9R9O|1|C2|G|1111
9R9O|1|C2|G|1112
9R9O|1|C2|A|1113
9R9O|1|C2|G|1114
9R9O|1|C2|U|1115
9R9O|1|C2|A|1116
9R9O|1|C2|U|1117
9R9O|1|C2|G|1118
*
9R9O|1|C2|U|1129
9R9O|1|C2|G|1130
9R9O|1|C2|A|1131
9R9O|1|C2|A|1132
9R9O|1|C2|A|1133
9R9O|1|C2|C|1134

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain Ln

Large ribosomal subunit protein eL41B

Chain SX

40S ribosomal protein S23-A