IL_9R9O_192

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

9R9O|1|C2|U|1432, 9R9O|1|C2|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C2|U|1276
9R9O|1|C2|G|1277
9R9O|1|C2|G|1278
*
9R9O|1|C2|U|1430
9R9O|1|C2|C|1431
9R9O|1|C2|U|1432
9R9O|1|C2|G|1433
9R9O|1|C2|U|1434
9R9O|1|C2|G|1435
9R9O|1|C2|A|1436

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

40S ribosomal protein S10-A

Chain SU

Small ribosomal subunit protein uS10

Chain Sd

Small ribosomal subunit protein uS14A