IL_9R9O_196

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

9R9O|1|C2|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_196 not in the Motif Atlas

Homologous match to IL_9PN5_212

Geometric discrepancy: 0.1769

The information below is about IL_9PN5_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9R9O|1|C2|C|1339
9R9O|1|C2|U|1340
9R9O|1|C2|A|1341
9R9O|1|C2|C|1342
*
9R9O|1|C2|G|1383
9R9O|1|C2|A|1384
9R9O|1|C2|G|1385

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16-A

Chain SR

40S ribosomal protein S17-B

Chain SU

Small ribosomal subunit protein uS10

Chain Sg

Guanine nucleotide-binding protein subunit beta-like protein