IL_9R9P_019

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

9R9P|1|C1|U|534, 9R9P|1|C1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C1|G|531
9R9P|1|C1|A|532
9R9P|1|C1|A|533
9R9P|1|C1|U|534
9R9P|1|C1|G|535
9R9P|1|C1|U|536
9R9P|1|C1|A|537
9R9P|1|C1|G|538
*
9R9P|1|C1|U|553
9R9P|1|C1|A|554
9R9P|1|C1|U|555
9R9P|1|C1|U|556
9R9P|1|C1|A|557
9R9P|1|C1|U|558
9R9P|1|C1|A|559
9R9P|1|C1|G|560
9R9P|1|C1|C|561

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14-A

Chain LS

60S ribosomal protein L20-A