IL_9R9P_192

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAUG*UGAUG

Length

11 nucleotides

Bulged bases

9R9P|1|C2|C|1274, 9R9P|1|C2|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|U|1272
9R9P|1|C2|G|1273
9R9P|1|C2|C|1274
9R9P|1|C2|A|1275
9R9P|1|C2|U|1276
9R9P|1|C2|G|1277
*
9R9P|1|C2|U|1434
9R9P|1|C2|G|1435
9R9P|1|C2|A|1436
9R9P|1|C2|U|1437
9R9P|1|C2|G|1438

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

40S ribosomal protein S10-A

Chain SU

Small ribosomal subunit protein uS10

Chain Sd

Small ribosomal subunit protein uS14A