IL_9RHU_018
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9RHU|1|A1|U|362, 9RHU|1|A1|C|400, 9RHU|1|A1|C|401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_018 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.0623
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9RHU|1|A1|U|360
9RHU|1|A1|A|361
9RHU|1|A1|U|362
9RHU|1|A1|C|363
9RHU|1|A1|A|364
9RHU|1|A1|A|365
*
9RHU|1|A1|U|397
9RHU|1|A1|G|398
9RHU|1|A1|A|399
9RHU|1|A1|C|400
9RHU|1|A1|C|401
9RHU|1|A1|A|402
9RHU|1|A1|C|403
9RHU|1|A1|G|404
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain T1
- 40S ribosomal protein S8
- Chain W1
- Small ribosomal subunit protein uS17
- Chain i1
- 40S ribosomal protein S23
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