IL_9RHU_027

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

9RHU|1|A1|C|549

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_027 not in the Motif Atlas

Geometric match to IL_9H3G_227

Geometric discrepancy: 0.2192

The information below is about IL_9H3G_227

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RHU|1|A1|G|536
9RHU|1|A1|A|537
9RHU|1|A1|C|538
*
9RHU|1|A1|G|547
9RHU|1|A1|G|548
9RHU|1|A1|C|549
9RHU|1|A1|C|550

Current chains

Chain A1

18S rRNA

Nearby chains

Chain E1

40S ribosomal protein eS30