IL_9RHU_044

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_044 not in the Motif Atlas

Geometric match to IL_8GLP_233

Geometric discrepancy: 0.0875

The information below is about IL_8GLP_233

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RHU|1|A1|G|875
9RHU|1|A1|A|876
9RHU|1|A1|C|877
*
9RHU|1|A1|G|911
9RHU|1|A1|C|912
9RHU|1|A1|C|913

Current chains

Chain A1

18S rRNA

Nearby chains

Chain N2

Ribosomal protein L19

Chain S1

Small ribosomal subunit protein eS7

Chain W1

Small ribosomal subunit protein uS17