IL_9RHU_047

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9RHU|1|A1|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_047 not in the Motif Atlas

Homologous match to IL_9H3G_198

Geometric discrepancy: 0.0711

The information below is about IL_9H3G_198

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9RHU|1|A1|G|926
9RHU|1|A1|A|927
9RHU|1|A1|C|928
*
9RHU|1|A1|G|1015
9RHU|1|A1|U|1016
9RHU|1|A1|U|1017
9RHU|1|A1|U|1018

Current chains

Chain A1

18S rRNA

Nearby chains

Chain B1

Small ribosomal subunit protein eS27

Chain Y1

Small ribosomal subunit protein uS15

Chain Y2

60S ribosomal protein L30