IL_9RHU_054
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9RHU|1|A1|C|1154, 9RHU|1|A1|U|1156, 9RHU|1|A1|G|1158
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_054 not in the Motif Atlas
- Homologous match to IL_9H3G_205
- Geometric discrepancy: 0.1128
- The information below is about IL_9H3G_205
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9RHU|1|A1|C|1092
9RHU|1|A1|G|1093
9RHU|1|A1|A|1094
*
9RHU|1|A1|U|1153
9RHU|1|A1|C|1154
9RHU|1|A1|U|1155
9RHU|1|A1|U|1156
9RHU|1|A1|U|1157
9RHU|1|A1|G|1158
9RHU|1|A1|G|1159
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain B1
- Small ribosomal subunit protein eS27
- Chain N1
- 40S ribosomal protein S2
- Chain W1
- Small ribosomal subunit protein uS17
- Chain Y1
- Small ribosomal subunit protein uS15
- Chain h1
- Small ribosomal subunit protein uS8
- Chain i1
- 40S ribosomal protein S23
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