IL_9RHU_103
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_103 not in the Motif Atlas
- Homologous match to IL_8GLP_005
- Geometric discrepancy: 0.0368
- The information below is about IL_8GLP_005
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.4
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9RHU|1|A3|C|30
9RHU|1|A3|U|31
9RHU|1|A3|G|32
9RHU|1|A3|A|33
9RHU|1|A3|A|34
9RHU|1|A3|U|35
9RHU|1|A3|U|36
9RHU|1|A3|U|37
*
9RHU|1|A3|A|44
9RHU|1|A3|U|45
9RHU|1|A3|U|46
9RHU|1|A3|A|47
9RHU|1|A3|G|48
9RHU|1|A3|U|49
9RHU|1|A3|C|50
9RHU|1|A3|A|51
9RHU|1|A3|G|52
Current chains
- Chain A3
- 28S rRNA
Nearby chains
- Chain H2
- Large ribosomal subunit protein eL13
- Chain J2
- Ribosomal protein L15
- Chain W2
- 60S ribosomal protein L27a
- Chain f2
- Ribosomal protein L37
- Chain j2
- Ribosomal protein L36a
Coloring options: