IL_9RHU_106
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGAAU*AAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 9RHU|1|A3|G|119, 9RHU|1|A3|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_106 not in the Motif Atlas
- Geometric match to IL_8GLP_287
- Geometric discrepancy: 0.0572
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9RHU|1|A3|C|118
9RHU|1|A3|G|119
9RHU|1|A3|A|120
9RHU|1|A3|A|121
9RHU|1|A3|U|122
*
9RHU|1|A3|A|147
9RHU|1|A3|A|148
9RHU|1|A3|A|149
9RHU|1|A3|U|150
9RHU|1|A3|G|151
9RHU|1|A3|U|152
9RHU|1|A3|G|153
Current chains
- Chain A3
- 28S rRNA
Nearby chains
- Chain C2
- Large ribosomal subunit protein eL8
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J2
- Ribosomal protein L15
- Chain d2
- 60S ribosomal protein L35
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