IL_9RHU_142

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUC*GCUCG

Length

8 nucleotides

Bulged bases

9RHU|1|A3|C|1105, 9RHU|1|A3|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_142 not in the Motif Atlas

Geometric match to IL_8GLP_043

Geometric discrepancy: 0.1692

The information below is about IL_8GLP_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9RHU|1|A3|C|997
9RHU|1|A3|U|998
9RHU|1|A3|C|999
*
9RHU|1|A3|G|1104
9RHU|1|A3|C|1105
9RHU|1|A3|U|1106
9RHU|1|A3|C|1107
9RHU|1|A3|G|1108

Current chains

Chain A3

28S rRNA

Nearby chains

Chain B2

60S ribosomal protein L7

Chain X2

60S ribosomal protein L29