IL_9RHU_186
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 9RHU|1|A3|A|1899
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_186 not in the Motif Atlas
- Homologous match to IL_8GLP_082
- Geometric discrepancy: 0.2181
- The information below is about IL_8GLP_082
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.4
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
9RHU|1|A3|U|1896
9RHU|1|A3|A|1897
9RHU|1|A3|U|1898
9RHU|1|A3|A|1899
9RHU|1|A3|G|1900
9RHU|1|A3|A|1901
9RHU|1|A3|C|1902
9RHU|1|A3|A|1903
9RHU|1|A3|G|1904
*
9RHU|1|A3|C|1961
9RHU|1|A3|C|1962
9RHU|1|A3|G|1963
9RHU|1|A3|A|1964
9RHU|1|A3|A|1965
Current chains
- Chain A3
- 28S rRNA
Nearby chains
- Chain i2
- Ubiquitin-ribosomal protein eL40 fusion protein
- Chain m2
- Large ribosomal subunit protein uL10
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