IL_9RHU_188

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9RHU|1|A3|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_188 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1221

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9RHU|1|A3|G|1940
9RHU|1|A3|A|1941
9RHU|1|A3|G|1942
9RHU|1|A3|U|1943
9RHU|1|A3|G|1944
*
9RHU|1|A3|C|1953
9RHU|1|A3|U|1954
9RHU|1|A3|C|1955

Current chains

Chain A3

28S rRNA

Nearby chains

Chain n2

60S ribosomal protein L12