IL_9RHU_194

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_194 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0441

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9RHU|1|A3|G|2201
9RHU|1|A3|U|2202
9RHU|1|A3|A|2203
9RHU|1|A3|G|2204
9RHU|1|A3|U|2205
9RHU|1|A3|A2M|2206
9RHU|1|A3|OMG|2207
*
9RHU|1|A3|C|3590
9RHU|1|A3|G|3591
9RHU|1|A3|A|3592
9RHU|1|A3|A|3593
9RHU|1|A3|A|3594
9RHU|1|A3|C|3595

Current chains

Chain A3

28S rRNA

Nearby chains

Chain F3

Large ribosomal subunit protein uL4

Chain L2

Large ribosomal subunit protein uL22