IL_9RHU_224

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9RHU|1|A3|A2M|3517, 9RHU|1|A3|C|3523, 9RHU|1|A3|C|3542

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|C|3513
9RHU|1|A3|5MC|3514
9RHU|1|A3|A|3515
9RHU|1|A3|A|3516
9RHU|1|A3|A2M|3517
9RHU|1|A3|U|3518
9RHU|1|A3|G|3519
9RHU|1|A3|C|3520
9RHU|1|A3|C|3521
9RHU|1|A3|U|3522
9RHU|1|A3|C|3523
9RHU|1|A3|OMG|3524
*
9RHU|1|A3|OMC|3540
9RHU|1|A3|G|3541
9RHU|1|A3|C|3542
9RHU|1|A3|G|3543

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain l1

Small ribosomal subunit protein eS32

Chain p2

Eukaryotic peptide chain release factor subunit 1