IL_9RHU_248

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

9RHU|1|A3|G|4268, 9RHU|1|A3|A2M|4269

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_248 not in the Motif Atlas

Homologous match to IL_9PN5_103

Geometric discrepancy: 0.0656

The information below is about IL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9RHU|1|A3|OMC|4202
9RHU|1|A3|PSU|4203
9RHU|1|A3|C|4204
*
9RHU|1|A3|G|4266
9RHU|1|A3|PSU|4267
9RHU|1|A3|G|4268
9RHU|1|A3|A2M|4269
9RHU|1|A3|G|4270

Current chains

Chain A3

28S rRNA

Nearby chains

Chain E3

Ribosomal protein L3

Chain G2

Choriogonadotropin subunit beta variant 1,Genome polyprotein,Genome polyprotein

Chain R2

Ribosomal protein L23