IL_9RHU_258
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_258 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.0373
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9RHU|1|A3|C|4342
9RHU|1|A3|U|4343
9RHU|1|A3|C|4344
9RHU|1|A3|A|4345
9RHU|1|A3|G|4346
9RHU|1|A3|U|4347
9RHU|1|A3|A|4348
9RHU|1|A3|C|4349
*
9RHU|1|A3|G|4354
9RHU|1|A3|G|4355
9RHU|1|A3|A|4356
9RHU|1|A3|A|4357
9RHU|1|A3|C|4358
9RHU|1|A3|C|4359
9RHU|1|A3|G|4360
Current chains
- Chain A3
- 28S rRNA
Nearby chains
- Chain D2
- 60S ribosomal protein L9
- Chain E3
- Ribosomal protein L3
- Chain R2
- Ribosomal protein L23
- Chain i2
- Ubiquitin-ribosomal protein eL40 fusion protein
- Chain q2
- ATP binding cassette subfamily E member 1
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