IL_9RHU_269

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_269 not in the Motif Atlas

Geometric match to IL_4XW0_002

Geometric discrepancy: 0.2033

The information below is about IL_4XW0_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9RHU|1|A3|U|4624
9RHU|1|A3|C|4625
9RHU|1|A3|C|4626
9RHU|1|A3|C|4627
*
9RHU|1|A3|G|4670
9RHU|1|A3|U|4671
9RHU|1|A3|C|4672
9RHU|1|A3|A|4673

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A2

60S ribosomal protein L6

Chain I2

60S ribosomal protein L14