IL_9RHU_272

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(PSU)UCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_272 not in the Motif Atlas

Homologous match to IL_9AXU_117

Geometric discrepancy: 0.133

The information below is about IL_9AXU_117

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9RHU|1|A3|PSU|4711
9RHU|1|A3|U|4712
9RHU|1|A3|C|4713
9RHU|1|A3|G|4714
*
9RHU|1|A3|C|4722
9RHU|1|A3|C|4723
9RHU|1|A3|U|4724
9RHU|1|A3|G|4725

Current chains

Chain A3

28S rRNA

Nearby chains

Chain E3

Ribosomal protein L3

Chain L2

Large ribosomal subunit protein uL22

Chain Z2

60S ribosomal protein L31