IL_9RHU_280

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAACGCG*CUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_280 not in the Motif Atlas

Geometric match to IL_8QYX_166

Geometric discrepancy: 0.0443

The information below is about IL_8QYX_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.1

Basepair signature

cWW-tSH-L-R-L-tHH-cWW

Number of instances in this motif group

5

Unit IDs

9RHU|1|B3|G|21
9RHU|1|B3|A|22
9RHU|1|B3|A|23
9RHU|1|B3|C|24
9RHU|1|B3|G|25
9RHU|1|B3|C|26
9RHU|1|B3|G|27
*
9RHU|1|B3|C|52
9RHU|1|B3|U|53
9RHU|1|B3|A|54
9RHU|1|B3|A|55
9RHU|1|B3|G|56
9RHU|1|B3|C|57

Current chains

Chain B3

5S rRNA

Nearby chains

Chain F2

60S ribosomal protein L11

Chain G3

Large ribosomal subunit protein uL18