IL_9RHU_283
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_283 not in the Motif Atlas
- Geometric match to IL_8QYX_169
- Geometric discrepancy: 0.0312
- The information below is about IL_8QYX_169
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26290.1
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9RHU|1|B3|G|71
9RHU|1|B3|U|72
9RHU|1|B3|U|73
9RHU|1|B3|A|74
9RHU|1|B3|G|75
9RHU|1|B3|U|76
9RHU|1|B3|A|77
9RHU|1|B3|C|78
*
9RHU|1|B3|G|98
9RHU|1|B3|G|99
9RHU|1|B3|A|100
9RHU|1|B3|A|101
9RHU|1|B3|U|102
9RHU|1|B3|A|103
9RHU|1|B3|C|104
Current chains
- Chain B3
- 5S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain B2
- 60S ribosomal protein L7
- Chain E2
- 60S ribosomal protein L10
- Chain G3
- Large ribosomal subunit protein uL18
- Chain O2
- Large ribosomal subunit protein eL20
- Chain P2
- 60S ribosomal protein L21
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