IL_9RJA_143

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

9RJA|1|a|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RJA_143 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.1097

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9RJA|1|a|A|2070
9RJA|1|a|A|2071
*
9RJA|1|a|U|2438
9RJA|1|a|A|2439
9RJA|1|a|C|2440
9RJA|1|a|U|2441

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2